Troubleshooting and Maintaining Certificate Authority on Domain Controllers for Seamless Operations

September 18, 2025 by Andrew Smith

If you’re running a domain controller in a Windows environment, you’ve likely come across a Certificate Authority (CA). It’s the unsung hero that helps keep secure communications flowing. But when things go sideways, it can bring operations to a halt. Don’t worry—troubleshooting and maintaining a CA doesn’t have to be scary. In fact, it can be simple, and even fun, when broken down well.

What is a Certificate Authority (CA)?

A Certificate Authority is like a digital notary. It says, “Hey, this server is who it says it is.” It issues digital certificates which verify identities. Without it, services like HTTPS, smartcard logons, and email encryption could break.

When a Domain Controller acts as a CA, it means secure services can function inside your network with trust. But if the CA stops working? Chaos. Logins might fail, and users may not access services.

Why CAs Break… and How to Tell

Sometimes it’s a configuration error. Other times, a certificate is expired or revoked. Or maybe someone made a policy change that broke things.

Common signs your CA might be in trouble:

  • Clients can’t request certificates
  • Event logs show CertificateServicesClient errors
  • Certain services randomly stop working
  • Enrollment or auto-enrollment fails

The good news? You can troubleshoot and fix most issues in a few simple steps.

Step-by-Step: Troubleshooting the CA

1. Start with Event Viewer

Open Event Viewer and go to:

  • Applications and Services Logs
  • Microsoft → Windows → CertificateServicesClient etc.

Look for error messages. They’re usually pretty detailed. Pay attention to timestamps and error codes.

2. Check CA Services

Run services.msc and confirm these are running:

  • Active Directory Certificate Services
  • Key Distribution Center (KDC)

If they aren’t, start them and note any errors. Watch closely for permission issues or cert store corruption.

3. Validate Certificate Templates

Use certtmpl.msc to open and review templates. Maybe a template was deleted or misconfigured. Make sure it’s published and has appropriate permissions.

4. Use Certutil

This command-line utility is magical. Run it in an elevated CMD.

certutil –CAinfo

You’ll see important CA properties and if it’s active.

Another great command:

certutil –verify –urlfetch <certfilename.cer>

This one checks if the certificate can reach the CRL or OCSP.

5. CRL and AIA Paths

Ensure your CRL (Certificate Revocation List) and AIA (Authority Information Access) paths are reachable by clients. If those URLs are down or changed, certificates won’t be validated.

6. Time Sync!

Certificate validation is sensitive to time. Confirm the Domain Controller and all clients are in sync. Use:

w32tm /query /status

If there’s a skew, fix it. Time issues can break authentication.

Maintaining Your CA Like a Pro

Once it’s working, let’s keep it that way.

1. Regular Backups

You can lose everything if your CA server crashes. Backup regularly.

Use:

certutil -backup C:\CA_Backup

This includes your cert database, keys, and config.

2. Monitor Certificate Expirations

Set calendar reminders or use scripts to monitor which certs are expiring soon.

certutil –store My

Look at the validity period. Don’t let your CA certificate expire—it’s a world of hurt!

3. Auto-enrollment Settings

Make sure they’re correct in Group Policy:

  • Go to Group Policy Editor
  • Navigate to:
  • Computer Config → Policies → Windows Settings → Security Settings → Public Key Policies

Enable auto-enrollment and set to renew expired certs.

4. Publish CRLs Frequently

Revoked certs need a way to be known by clients. Publish fresh CRLs on a schedule.

certutil -crl

Set up a scheduled task to run weekly or daily.

5. Review Delegations and Permissions

Not everyone should manage your CA. Keep admin access tight.

Use certsrv.msc to configure who can request, issue, or revoke certs.

When to Consider Renewing Your CA Certificate

Your CA certificate has a shelf life. Usually 5 or 10 years. Don’t wait until the last moment to renew it.

Here’s how to renew:

certutil -renewCert ReuseKeys

This keeps the same key pair and updates the expiration date.

Test everything in a lab first. A misstep here can cause wide-scale trust issues.

Recovering a Broken CA

If all else fails, restore from backup:

certutil -restore C:\CA_Backup

Also, restore your private key and any custom configurations.

If the CA is completely gone, you may need to re-install the CA role and import your database. That’s more complex but still possible if you prepared backups correctly.

Helpful Tools to Keep Handy

  • PKIView.msc – Visual overview of CA health
  • certutil – Swiss-army knife for cert management
  • Event Viewer – Shows all service logs
  • Wireshark – If you’re digging into CRL/AIA path issues

Final Thoughts

Managing a Certificate Authority doesn’t have to be painful. Small, regular checks keep everything running smoothly. Understanding what could go wrong—and how to fix it—keeps you ahead of trouble.

Remember, your CA is the digital trust engine of your network. A little TLC goes a long way.

Happy cert-managing!